I'm not really understanding the topic right now. I mean, most of the things we ship aren't really from yuri anime but they were so obvious that it is literally marked as a yuri anime even though it's not. I mean, Touhou? Madoka? Nanoha? It just screams Gay. But is that considered a yuri anime or not?
Anyway, I'll just give you what I think could be classified as a non-yuri anime.
Kyoukai Senjou no Horizon has two lesbian witches, but it's only in subtext and the characters are only minor so you don't really notice it. I haven't seen season 2 yet but they acted kinda Gay in the first season.
Prison School has a yuri development between the underground and above ground StuCo Presidents. It hasn't been shown in the anime yet, though.
D-Frag 'kinda' had a yuri vibe between the kouhai and the little sister, but that's probably a friendship vibe and I'm just getting my hopes up. Don't take me up on that. Just saying.
Girl Meets Girl is kinda a weird anime. I mean, it's yuri. But it's not yuri. But it's still yuri. Even though it's not really- ugh this is confusing.
Nijirou Days has a lesbian in it, but sadly the girl she loves, loves another.
Love Live, idolm@ster, Aikatsu. I don't really need to explain this, do I?
As for Manga, oh boy there's a lot. I'll just list out a few that I can remember.
Arachnid, my most favourite series has an overly attached classmate who steals and sniffs the protagonist's panties. Really recommend it if you haven't read it.
Young Gun Carnival has one of the protagonists who is dating a girl. They're a full fledged couple and it shows a lot so I don't really think this to be subtext.
Kuzu no Honkai is angsty af and the girl's classmate is in love with her. And they do things. Very very fun things. But the Manga isn't fun. Just saying...
Horimiya is the same, as some girl is in love with the main girl. But they don't so stuff, which is a bummer. And it's not really going to happen.
Tomo-chan wa Onnanoko has a loving bond between the two childhood friends (the girls, not the main guy) but that's probably just friendship. What a shame.
There's what I can remember at a drop of a hat. There's loads more but it's like 3 in the morning so yeah.