Yes, I post this because I want to see main character either coming out, or at least coming into terms with their sexual orientation. Loving a specific person of the same sex just does not fly. The majority of the suggestions here that have been given I have already read them, or partially read them. Maria-holic can be considered not a Yuri, Shimanami Tasogare does not fit anywhere other than in a category of its own (LGBT), It's a Detached Relationship does have a proper self-aware lesbian main couple (and side character). Almost all of Takemiya JIn's characters are out publicaly, socially, or at least to themselves (thus we have lots of bar scenes).
The whole point is to find example that mimics "real life". Its like in fragments of love the main character explained to the side character as to why they are gay, and essentially there is no answer to it, being gay is being gay, that is the reason.
Please post some more examples so that I can catch up on what I miss....